Compilation
My favorite single-cell toolsA curated list of tools for scRNA-seq and scATAC-seq data processing.
GitHub ↗
Apps
ShinyBrainInteractive app exploring bulk brain expression (CORTECON, BrainSpan) of human duplicate genes from Soto, Uribe-Salazar, et al. (2025).
shinyapps.io ↗
Apps
ShinyCNInteractive app to explore copy-number data of human duplicate genes from Soto, Uribe-Salazar, et al. 2025.
shinyapps.io ↗
Code
HSD brain evolutionCode and data for Soto, Uribe-Salazar, et al. 2025.
GitHub ↗
Code
GYPACode for the analysis of the GYPA locus for Ostridge et al. 2025.
GitHub ↗
Code
T2T variantsDennis lab code for Aganezov, Yan, Soto, Kirsche, Zarate, et al. 2022.
GitHub ↗